I am NOT qualified to answer to your question from personal experience as I have not been treated with BCG. But I have seen some posting similar situation that though mycobacterium tuberculosis was not confirmed but the patient went on 9 months with multiple antibiotics treatment specific for tuberculosis treatment. Tuberculosis caused by intravesical BCG is so rate that only 1 case is reported in a year in the State of California. In the US with population of 330 million, 7,102 cases of tuberculosis were reported to Center of Disease Control (CDC), of which 121 cases were Bovine tuberculosis which is caused by Mycobacterium bovis, (M. bovis)). BCG is attenuated M.bovis. Majority of 121 people who contracted Bovis tuberculosis are from Mexico and other countries of the south of border. The reason why they developed Bovine tuberculosis is because they eat unpasteurized cheese and drink unpasteurized milk. Some live in Michigan. Deer's they hunt and eat could have caused people get infected with M. bovis or sometimes butcher get infected from the cut. MERCK manufactures about 800K vials of BCG for bladder cancers each year, so I estimate that 300-500 vials of BCG are prescribe in the US each year. So, it must be extremely rare that BCG treatment causes Bovis tuberculosis.
Dr. Lamm who is considered as a guru of treating NMIBC with BCG published in 1986 on BCG toxicity and its treatment. If patients suffer severe or prolonged symptoms, treatment wit 300mg isoniazid daily, which I believe is one of antibiotics you are taking, and , diphenhydramine (antihistamine) and acetaminophen (pain reliever) or ibuprofen is (anti-inflammatory drug recommended. But it sounds like he did not put the patient with other antibiotics for tuberculosis. Most of the patients with high fever in his experience were not hospitalized but if patients with a simple uncomplicated febrile response to BCG cannot be distinguished from those who will suffer systemic BCG infection or anaphylaxis. Therefore, we recommend that such patients be hospitalized and treated with antituberculous antibiotics '
Dr. Michael O'Donnell of University of Iowa, another GURU for NMIBC authored the article on Infectious complications of intravesical BCG immunotherapy.
Localized persistent cystitis (manifested as severe urgency, frequency, and dysuria) even after discontinuing BCG suggest development of BCG cystitis. This is an uncommon condition that presents with systemic symptoms and sterile pyuria (eg abnormal urinalysis with negative bacterial cultures). Symptoms may continue for weeks to months despite antimycobacterial therapy, suggesting a hypersensitivity component. Cystoscopically, the bladder appears red, beefy, and irritated, typically with acute and granulomatous inflammation. In cases of severe BCG cystitis, systemic steroids (in the form of a three to six-week [rapid to slow]
prednisone
taper) can provide rapid and durable relief from unremitting cystitis symptom. Given risk for potentiating BCG spread, the patient should be maintained on antimycobacterial therapy while on steroids.
www.medilib.ir/uptodate/show/2973#rid22
Since CT did not find anything like tuberculosis in your chest, it will be difficult diagnose if you developed M.bovis tuberculosis or not. So, I guess they are doing the treatment for tuberculosis as precautional manner.